CGSB

2024

Title

Authors/Co-Authors

1

Macroalgal deep genomics illuminate multiple paths to aquatic, photosynthetic multicellularity

David Nelson

2

Adaptive Evolution Signatures in Prochlorococcus: ORFeome Resources and Insights from Comparative Genomics

David Nelson

3

Nanobody against SARS-CoV-2 non-structural protein Nsp9 inhibits viral replication in human airway epithelia

Tomas Venit

4

Adaptive Evolution Signatures in Prochlorococcus: Open Reading Frame (ORF)eome Resources and Insights from Comparative Genomics

Kourosh Salehi-Ashtiani

5

LA4SR: illuminating the dark proteome with generative AI

Ashish Jaiswal

2023

Title

Authors/Co-Authors

1

Crossing the Rift valley: using complete mitogenomes to infer the diversification and biogeographic history of ethiopian highlands Ptychadena (anura: Ptychadenidae)

Sandra Goutte

2022

Title

Authors/Co-Authors

1

Myosin VI regulates the spatial organisation of mammalian transcription initiation

Tomas Venit

2

Omicron Spike protein has a positive electrostatic surface that promotes ACE2 recognition and antibody escape

Hin Hark

3

Signatures of selection underpinning rapid coral adaptation to the world’s warmest reefs

Emily J. Howells

4

Linked-Read Sequencing of Eight Falcons Reveals a Unique Genomic Architecture in Flux

Stéphane Boissinot

5

Molecular Mechanisms behind Safranal’s Toxicity to HepG2 Cells from Dual Omics

David Nelson

6

Tissue-Specific Transcriptomes Outline Halophyte Adaptive Strategies in the Gray Mangrove (Avicennia marina)

David Nelson

7

Genetic and morphometric analyses of historical type specimens clarify the taxonomy of the Ethiopian Leptopelis gramineus species complex (Anura, Arthroleptidae)

Sandra Goutte

8

Genomic Analyses Reveal Association of ASIP with a Recurrently evolving Adaptive Color Pattern in Frogs

Sandra Goutte

2021

Title

Authors/Co-Authors

1

Large-scale genome sequencing reveals the driving forces of viruses in microalgal evolution

David Nelson

2

Mitogenome analyses elucidate the evolutionary relationships of a probable Eocene wet tropics relic in the xerophilic lizard genus Acanthodactylus

Sebastian Kirchhof

3

Historical contingency, geography and anthropogenic patterns of exposure drive the evolution of host switching in the Blastocystis species-complex

Justin Wilcox

4

Enhancing the heat tolerance ofreef-building corals to future warming

Emily J Howells

5

Establishment and characterization of prostate organoids from treatment‑naïve patients with prostate cancer

Mohamed al Sayegh

6

Structural Modeling of the SARS-CoV-2 Spike/Human ACE2 Complex Interface can Identify High-Affinity Variants Associated with Increased Transmissibility

Hin Hark

7

Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae)

Sandra Goutte

2020

Title

Authors/Co-Authors

1

Nuclear myosin VI regulates the spatial organization of mammalian transcription initiation

Tomas Venit

2

Nuclear myosin 1 activates p21 gene transcription in response to DNA damage through a chromatin-based mechanism

Tomas Venit

3

Differential divergence in autosomes and sex chromosomes is associated with intra‐island diversification at a very small spatial scale in a songbird lineage

Stéphane Boissinot

4

Low Symbiodiniaceae diversity in a turbid marginal reef environment

E G Smith

5

β-actin contributes to open chromatin for activation of the adipogenic pioneer factor CEBPA during transcriptional reprograming

Mohamed Al-Sayegh

6

Transcriptional Profiling Reveals Ribosome Biogenesis, Microtubule Dynamics and Expression of Specific lncRNAs to be Part of a Common Response to Cell-Penetrating Peptides

Piergiorgio Percipalle

7

Mouse Embryonic Fibroblast Adipogenic Potential: A Comprehensive Transcriptome Analysis

Mohamed Al-Sayegh

2019

Title

Authors/Co-Authors

1

Indel-informed Bayesian analysis suggests cryptic population structure between Plasmodium knowlesi of humans and long-tailed macaques (Macaca fascicularis) in Malaysian Borneo

Justin J S Wilcox

2

Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis

Stéphane Boissinot

3

Selection at behavioural, developmental and metabolic genes is associated with the northward expansion of a successful tropical colonizer

Stéphane Boissinot

4

Mitochondria-localized β-actin is essential for priming innate antiviral immune signaling by regulating IRF3 protein stability

Piergiorgio Percipalle

5

Incense Burning is Associated with Human Oral Microbiota Composition

Raghib Ali

6

Analysis of global transcriptome changes in mouse embryonic fibroblasts after dsDNA and dsRNA viral mimic stimulation

Piergiorgio Percipalle

7

NASQAR: A web-based platform for high-throughput sequencing data analysis and visualization

Nizar Drou

8

BioSAILs: versatile workflow management for high-throughput data analysis

Nizar Drou

9

Unconstrained peptoid tetramer exhibits a predominant conformation in aqueous solution

Glenn L. Butterfoss

10

Potential for Heightened Sulfur-Metabolic Capacity in Coastal Subtropical Microalgae

David R. Nelson

11

Establishment of atropisomerism in 3-indolyl furanoids: a synthetic, experimental and theoretical perspective

Glenn L. Butterfoss

12

Cooperative Intramolecular Hydrogen Bonding Strongly Enforces cis-Peptoid Folding

Glenn L. Butterfoss

2018

Title

Authors/Co-Authors

1

β-Actin–dependent global chromatin organization and gene expression programs control cellular identity

Nizar Drou

2

Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

Yann Bourgeois

3

β-actin regulates a heterochromatin landscape essential for optimal induction of neuronal programs during direct reprograming

Piergiorgio Percipalle

4

Multiple and independent phases of transposable element amplification in the genomes of Piciformes (woodpeckers and allies)

Stephane Boissinot

5

Sorting mRNA molecules for cytoplasmic transport and localization

Piergiorgio Percipalle

6

Evolutionary epigenomics of retrotransposon-mediated methylation spreading in rice

Michael D Purugganan

7

Recent secondary contacts, background selection and variable recombination rates shape genomic diversity in the model species Anolis carolinensis

Stephane Boissinot

8

Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon

Yann Bourgeois

9

Reversible Multicolor Photochromism of Dihydroazulene Crystals

Stefan Schramm

10

Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions

Glenn L. Butterfoss

11

Turning on Solid‐State Fluorescence with Light

Stefan Schramm

12

The relative composition of actin isoforms regulates cell surface biophysical features and cellular behaviors

Piergiorgio Percipalle

13

An actin-based nucleoskeleton involved in gene regulation and genome organization

Piergiorgio Percipalle

Pre 2018

Title

Authors/Co-Authors

1

The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization

Glenn L. Butterfoss

2

A non-canonical site reveals the cooperative mechanisms of microRNA-mediated silencing

Kristin C Gunsalus

3

Intracellular spectral recompositioning of light enhances algal photosynthetic efficiency

Weiqi Fu

4

LINE Insertion Polymorphisms are Abundant but at Low Frequencies across Populations of Anolis carolinensis.

Stephane Boissinot

5

Racemization barriers of atropisomeric 3,3’ bipyrroles: an experimental study with theoretical verification

Glenn L. Butterfoss

6

Peptoid nanosheets exhibit a new secondary-structure motif

Glenn L. Butterfoss

7

Assembly and analysis of eukaryotic Argonaute-RNA complexes in microRNA-target recognition

Kristin C Gunsalus

8

Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

Youssef Idaghdour

9

Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga Chlamydomonas reinhardtii

Jonathan M Flowers

10

Conformational Preferences of Peptide-Peptoid Hybrid Oligomers

Glenn L. Butterfoss

11

A Rotamer Library to Enable Modeling and Design of Peptoid

Glenn L. Butterfoss